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Species belonging to selected taxon:

Populus tremula x Populus tremuloides



ABOUT THIS RECORD

ID: MNEST002203
species: Populus tremula x Populus tremuloides
miRNA family: MIR396
source: miRNEST

Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTCCACAGCTTTCTTGAACTG

miRNA*
GATCAATAAAACTGGGGGAAGA

mismatches: 4
bulges: 1

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pre-miRNA
GGTGTGTTTGTATGTGACCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCACCTATTAGATTTATGTTGATGTTGTTGTGCGATATGCCATGACCAT
ATGACATTGTATTCATTTTTGCTGCGGATCAATAAAACTGGGGGAAGATACAAACAGGAGCAAAGAAAGTTGCTAT


dot-bracket secondary structure
((((..(((...(((...(((.(((((((.(((((.(((.(((.((((.(((((.....((((...(((.((((((((((((((.....).))))))...
..)))))))....))).)))).))))).)))).))).)))..)))))))))))).))).)))..)))...))))..



SIMILARITIES
miRBase ptc-MIR396b: 3e-61

PMRD ptc-miR396b: 3e-61

microPC miR396: 2e-50
UniProt no hits

RFAM MIR396: 8e-62
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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